| Occurrences: |
view occurrences
| id |
999e02d3-a5f2-4631-bd56-810ee97301a3
|
| scientificName |
Vasticardium
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATGTCAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGATGTAGGGCTGGCGGTGCGCCCGTAGTGGCGTTGTCTACTGCCAGTGCCTGCGATAAATAGAGGCCGGCGGACTTGTTCCCTTGGTGCTCTTGACTGAGCGGCTTGGGTGGCCGGAACGTTTACTGTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Vasticardium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:345698",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium burchardi",
"accession": "AB294682.1.2662_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium enode",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1048888",
"accession": "AB294681.1.3027_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium flavum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:381334",
"accession": "D88910.1.1852_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
e0b1974b-919b-4f8a-8e95-00b018aba92f
|
| scientificName |
Vasticardium
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATGTCAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGATGTAGGGCTGGCGGTGCGCCCGTAGTGGCGTTGTCTACTGCCAGTGCCTGCGATAAATAGAGGCCGGCGGACTTGTTCCCTTGGTGCTCTTGACTGAGCGGCTTGGGTGGCCGGAACGTTTACTGTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Vasticardium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:345698",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium burchardi",
"accession": "AB294682.1.2662_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium enode",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1048888",
"accession": "AB294681.1.3027_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium flavum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:381334",
"accession": "D88910.1.1852_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
| id |
e8fa4c8b-5b2f-432f-8b62-56048319be9a
|
| scientificName |
Vasticardium
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATGTCAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGATGTAGGGCTGGCGGTGCGCCCGTAGTGGCGTTGTCTACTGCCAGTGCCTGCGATAAATAGAGGCCGGCGGACTTGTTCCCTTGGTGCTCTTGACTGAGCGGCTTGGGTGGCCGGAACGTTTACTGTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Vasticardium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:345698",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium burchardi",
"accession": "AB294682.1.2662_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium enode",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1048888",
"accession": "AB294681.1.3027_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Vasticardium flavum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:381334",
"accession": "D88910.1.1852_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|