| Occurrences: |
view occurrences
| id |
ee034a88-04de-49f4-a3f9-6f7a0c183b4d
|
| scientificName |
Alitta succinea
|
| AphiaID |
234850
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S2
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTCCGGAACTCGAGGTAATGATCGAGAGGGACGGACGGGGGCATTCGTATCGCGGTGTGAGAGGTGAAATTCTTAGATCGCCGCGAGACGGGCTGCTGCGAAAGCGTCTGCCAAGAACGTTTTCATTGATCAAGAACGAAAGTCAGAGGCTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Neanthes succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Neanthes_succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"accession": "AY210447.1.1891_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
90.0
|
| id |
ac3e3eb7-4ffa-4d2e-bd12-53bb9ea1f4d2
|
| scientificName |
Alitta succinea
|
| AphiaID |
234850
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S7
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTCCGGAACTCGAGGTAATGATCGAGAGGGACGGACGGGGGCATTCGTATCGCGGTGTGAGAGGTGAAATTCTTAGATCGCCGCGAGACGGGCTGCTGCGAAAGCGTCTGCCAAGAACGTTTTCATTGATCAAGAACGAAAGTCAGAGGCTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Neanthes succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Neanthes_succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"accession": "AY210447.1.1891_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
42.0
|
| id |
9f309173-e5de-435c-b7d6-7e5b0da5b810
|
| scientificName |
Alitta succinea
|
| AphiaID |
234850
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S1
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTCCGGAACTCGAGGTAATGATCGAGAGGGACGGACGGGGGCATTCGTATCGCGGTGTGAGAGGTGAAATTCTTAGATCGCCGCGAGACGGGCTGCTGCGAAAGCGTCTGCCAAGAACGTTTTCATTGATCAAGAACGAAAGTCAGAGGCTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Neanthes succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Neanthes_succinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130391",
"accession": "AY210447.1.1891_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
|