| Occurrences: |
view occurrences
| id |
fc523174-bb68-4b3e-bdf8-019fd43c7db7
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-193
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
9f5288de-8abd-4e4a-b86c-d0658ba170f1
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-197
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
a6cff050-30d9-47b3-9b14-4330fc268ef6
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-194
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|