| Occurrences: |
view occurrences
| id |
9fd02f1f-d8a5-4d23-bacd-1e1e95bfa44e
|
| scientificName |
Obelia geniculata
|
| AphiaID |
117388
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-02
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGACTGGAGTCGTCGGGTCGGCCGCGAGGTCTGTTACTCGGCGGCTCTGTCATTACAATTCCCAGAGGCCTGTCGTGTGCTTCGCTGTACGCGGCAAGGGATTTGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Obelia geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789769.1.1693_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789771.1.1546_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789772.1.1290_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "FJ550548.1.1693_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_dichotoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117386",
"accession": "AY789767.1.1692_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
ec3e2e0b-1123-48d8-bb8f-84b0c5d82e01
|
| scientificName |
Obelia geniculata
|
| AphiaID |
117388
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-20
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGACTGGAGTCGTCGGGTCGGCCGCGAGGTCTGTTACTCGGCGGCTCTGTCATTACAATTCCCAGAGGCCTGTCGTGTGCTTCGCTGTACGCGGCAAGGGATTTGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Obelia geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789769.1.1693_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789771.1.1546_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "AY789772.1.1290_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_geniculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117388",
"accession": "FJ550548.1.1693_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Obelia_dichotoma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117386",
"accession": "AY789767.1.1692_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|