| Occurrences: |
view occurrences
| id |
f605835b-0b0e-4342-9b56-6120a6f30862
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-56
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
6.0
|
| id |
a5462baf-20e9-45af-b7ab-d9fcb6152fd5
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-59
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
a8b100ef-ca43-464c-8362-36d9fc21e254
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-58
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|