| Occurrences: |
view occurrences
| id |
de16cbc0-c45b-41db-9b49-29894e53cee0
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
109.0
|
| id |
a8b04e19-2919-44cf-950b-20fb13be2eef
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
59.0
|
| id |
eb5c31d5-7aae-414d-9e11-b2e8a9b68754
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-32
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
| id |
a695daf8-a22d-473e-b69d-0933ac859604
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
b7102c89-6933-489c-884a-8e500bb3106f
|
| scientificName |
Callopora lineata
|
| AphiaID |
111197
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-31
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|