| Occurrences: |
view occurrences
| id |
bba74e55-29be-49ca-a814-64fd896a6479
|
| scientificName |
Botrylloides niger
|
| AphiaID |
252289
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S178
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCAAGGAATTTAGCTCATTCCGGAGCTGCTTTAGATTGTGCTATTTTCTCCCTTCATTTAGCTAGAGTTTCTAGTATTTTAAGATCTTTAAATTTTATAACCACTTTGTTTAATATAAAAGTAAAAAGGTGGAGGATATTTTCAATATCTTTGTTCTGTTGAACTGTTTTAGTTACGACTATTTTGTTACTTTTATCTTTACCTGTTTTGGCTGCAGCTATTACAATGTTACTTTTCGATCGAAATTTTAACACTTCCTTTTTTGATCCTTCTGGGAGAGGAGATCCGGTTTTGTATCAGCACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides nigrum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215857",
"accession": "KT693198",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides nigrum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215857",
"accession": "MW278779",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "MT637961",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "MW817940",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "OM912589",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
59.0
|
| id |
ef67d808-1f91-41c9-beb1-e90e6a9e442d
|
| scientificName |
Botrylloides niger
|
| AphiaID |
252289
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S166
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCAAGGAATTTAGCTCATTCCGGAGCTGCTTTAGATTGTGCTATTTTCTCCCTTCATTTAGCTAGAGTTTCTAGTATTTTAAGATCTTTAAATTTTATAACCACTTTGTTTAATATAAAAGTAAAAAGGTGGAGGATATTTTCAATATCTTTGTTCTGTTGAACTGTTTTAGTTACGACTATTTTGTTACTTTTATCTTTACCTGTTTTGGCTGCAGCTATTACAATGTTACTTTTCGATCGAAATTTTAACACTTCCTTTTTTGATCCTTCTGGGAGAGGAGATCCGGTTTTGTATCAGCACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides nigrum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215857",
"accession": "KT693198",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides nigrum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215857",
"accession": "MW278779",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "MT637961",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "MW817940",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides niger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:252289",
"accession": "OM912589",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
2.0
|
|