| Occurrences: |
view occurrences
| id |
bee65022-1a31-41eb-a815-5b24339704c7
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| eventID |
SUVA1_20230531_WC
|
| materialSampleID |
USP-24-01-124
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
2.0
|
| id |
c423687e-464f-4520-879d-08e56d706daa
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| eventID |
SUVA1_20230531_WA
|
| materialSampleID |
USP-24-01-122
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
1.0
|
|