| Occurrences: |
view occurrences
| id |
e070a3f0-ba59-4c40-8b9a-e767853a7cc8
|
| scientificName |
Bugulina californica
|
| AphiaID |
833997
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20231128_S2A
|
| materialSampleID |
USP-24-01-169
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCATCTAGTCTCGGTCATAGTGGACCATCAGTTGATTTAGCAATTTTCTCCTTACACTTAGCTGGTGTCTCATCAATTTTAGGAGCAATTAATTTTATAACATCAACAATGAATATACGAAGAGGATCAATAACTATAATACATATCCCTCTATTAGTTTGAGCAGTTTTCATTACTGCTGTGTTACTACTACTATCTCTTCCAGTTCTAGCAGGCGCAATTACTATGCTGTTAACAGATCGAAATCTTAACACATCTTTTTTTGATCCTGCAGGAGGAGGAGATCCCATTTTATATCAACATCTCTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KY235445",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina stolonifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:834018",
"accession": "AY173427",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina stolonifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:834018",
"accession": "KC129849",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"accession": "MZ209213",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"accession": "MZ209214",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
411.0
|
| id |
c0329f29-09f2-4318-8b54-e5c660a5a2e4
|
| scientificName |
Bugulina californica
|
| AphiaID |
833997
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20231128_S2B
|
| materialSampleID |
USP-24-01-170
|
| target_gene |
COI
|
| DNA_sequence |
TTTATCATCTAGTCTCGGTCATAGTGGACCATCAGTTGATTTAGCAATTTTCTCCTTACACTTAGCTGGTGTCTCATCAATTTTAGGAGCAATTAATTTTATAACATCAACAATGAATATACGAAGAGGATCAATAACTATAATACATATCCCTCTATTAGTTTGAGCAGTTTTCATTACTGCTGTGTTACTACTACTATCTCTTCCAGTTCTAGCAGGCGCAATTACTATGCTGTTAACAGATCGAAATCTTAACACATCTTTTTTTGATCCTGCAGGAGGAGGAGATCCCATTTTATATCAACATCTCTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KY235445",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina stolonifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:834018",
"accession": "AY173427",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina stolonifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:834018",
"accession": "KC129849",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"accession": "MZ209213",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugulina californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:833997",
"accession": "MZ209214",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
43.0
|
|