| Occurrences: |
view occurrences
| id |
f73d110c-0ea9-4e95-82b7-69a1bfd84e55
|
| scientificName |
Rastrelliger kanagurta
|
| AphiaID |
127020
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S138
|
| target_gene |
COI
|
| DNA_sequence |
TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTTGATCTAACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATTAACTTTATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCTGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGAGGAGACCCAATCCTCTACCAGCACCTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "JN653483",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503051",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503063",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503083",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "JN653485",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
85.0
|
| id |
ec394585-9860-4fb1-982e-dd8f3e74806a
|
| scientificName |
Rastrelliger kanagurta
|
| AphiaID |
127020
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S137
|
| target_gene |
COI
|
| DNA_sequence |
TCTGGCCAGCAACTTAGCCCATGCCGGAGCGTCTGTTGATCTAACCATCTTCTCCCTTCACTTAGCAGGTGTTTCCTCTATTCTTGGTGCTATTAACTTTATCACCACAATTATTAACATGAAACCTGCAGCCACATCCCAGTATCAGACACCCCTGTTCGTCTGAGCAGTCCTAATTACAGCTGTTCTTCTGCTCCTGTCACTCCCAGTCCTTGCTGCTGGGATCACAATGCTCCTAACGGACCGAAATCTTAACACTACATTCTTTGACCCCGCAGGAGGAGGAGACCCAATCCTCTACCAGCACCTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "JN653483",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503051",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503063",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "LC503083",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Rastrelliger kanagurta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127020",
"accession": "JN653485",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
47.0
|
|