| Occurrences: |
view occurrences
| id |
ec5a0ab8-0fbf-4670-b94e-3fafa98ddb5e
|
| scientificName |
Apionsoma (Apionsoma) misakianum
|
| AphiaID |
266492
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-93
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apionsoma misakianum",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Apionsoma_misakianum",
"accession": "AY210440.1.1815_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Apionsoma_misakianum",
"accession": "DQ299952.1.1769_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
f9876d4d-ce29-45fe-96e4-e1d01cc993f6
|
| scientificName |
Apionsoma (Apionsoma) misakianum
|
| AphiaID |
266492
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-200
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apionsoma misakianum",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Apionsoma_misakianum",
"accession": "AY210440.1.1815_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Apionsoma_misakianum",
"accession": "DQ299952.1.1769_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|