| Occurrences: |
view occurrences
| id |
ed5610d4-790f-463a-b00f-8b55ec3b1323
|
| scientificName |
Paracaprella pusilla
|
| AphiaID |
211364
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S178
|
| target_gene |
COI
|
| DNA_sequence |
TTTAAGGTCTAGATTAGGCCACCCTGGTGCAGCTGTAGATATAGCAATTTTTTCACTCCATCTAGCTGGAGCTAGATCTATCCTTGGGGCTATTAATTTTATTTCAACAATTATTAATATGCGACCTGAAGGTATAACTATAGACCGCATACCTTTATTTGTTTGATCTGTTTTTATCACAGCTATCCTTCTGTTACTCTCTCTACCTGTTTTAGCCGGAGCTATTACAATACTTCTAACAGACCGAAATTTAAATACTTCATTTTTTGACCCTTTAGGGGGAGGTGACCCTATCTTGTACCAGCATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743500",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743503",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743504",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743505",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743507",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
4.0
|
| id |
f460aba9-2c23-43a3-ad26-83d7e2f56845
|
| scientificName |
Paracaprella pusilla
|
| AphiaID |
211364
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S161
|
| target_gene |
COI
|
| DNA_sequence |
TTTAAGGTCTAGATTAGGCCACCCTGGTGCAGCTGTAGATATAGCAATTTTTTCACTCCATCTAGCTGGAGCTAGATCTATCCTTGGGGCTATTAATTTTATTTCAACAATTATTAATATGCGACCTGAAGGTATAACTATAGACCGCATACCTTTATTTGTTTGATCTGTTTTTATCACAGCTATCCTTCTGTTACTCTCTCTACCTGTTTTAGCCGGAGCTATTACAATACTTCTAACAGACCGAAATTTAAATACTTCATTTTTTGACCCTTTAGGGGGAGGTGACCCTATCTTGTACCAGCATTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743500",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743503",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743504",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743505",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Paracaprella pusilla",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:211364",
"accession": "KF743507",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
4.0
|
|