| Occurrences: |
view occurrences
| id |
fc3a1141-f655-442b-b456-22a6ca4fb028
|
| scientificName |
Mytiloides
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S88
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGTGGTCCGCCGCATGGCGGTTACTGCTCGTCCTGACCTACCTCCCGGTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mytiloida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1506984",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus hanleyanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397091",
"accession": "AB569159.1.1859_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus plumula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506060",
"accession": "AB569162.1.1767_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus malaccanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506075",
"accession": "AB569160.1.1815_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Fungiacava eilatensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:216622",
"accession": "AB569158.1.1814_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus lithurus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506073",
"accession": "AB201236.1.1751_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
edb9b6c9-5758-41cf-a553-a8d53747bc93
|
| scientificName |
Mytiloides
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S72
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGTGGTCCGCCGCATGGCGGTTACTGCTCGTCCTGACCTACCTCCCGGTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mytiloida",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1506984",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus hanleyanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397091",
"accession": "AB569159.1.1859_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus plumula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506060",
"accession": "AB569162.1.1767_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus malaccanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506075",
"accession": "AB569160.1.1815_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Fungiacava eilatensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:216622",
"accession": "AB569158.1.1814_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leiosolenus lithurus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506073",
"accession": "AB201236.1.1751_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|